PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133683.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 356aa    MW: 39300.6 Da    PI: 9.661
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.61.2e-2152143187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++         +++++qC++k+e+l+kry+ + +++++   ++ +s++++++++ea
  XP_009133683.1  52 CWSLEETIALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPGVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVHYKRMEA 143
                     7*************************************88544444599*************************977999**********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003149115IPR001005SANT/Myb domain
PfamPF138371.1E-1951144No hitNo description
PROSITE profilePS500906.21453113IPR017877Myb-like domain
SMARTSM005957.3E-1460149IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSDPDSPLEQ VPLPVRNKSP PPQPDDSVTD LTIASTPAAV ATKNSRRLPP PCWSLEETIA  60
LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK TAVQCRHKME KLRKRYRTEI  120
QRARSVPVAR FVSSWVHYKR MEAMEDRPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN  180
GTAGGSSSSG GIRIRIPTGV SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV  240
RIQEGGGGGE ERAGKRGREM MMMMTTEEGE EEEESDDPMV EIASAIKLLG DTLLRTEEKK  300
MEMTREIEAM RMEMEMKRTK MILESQQRIV EAFAKSMSEN LEEKKKKARR VSSLPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133683.10.0PREDICTED: uncharacterized protein LOC103858141
TrEMBLM4C8320.0M4C832_BRARP; Uncharacterized protein
STRINGBra000360.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-122Trihelix family protein